pullSnpGeno {AlphaSimR} | R Documentation |
Retrieves SNP genotype data
pullSnpGeno(pop, snpChip = 1, chr = NULL, simParam = NULL)
pop |
an object of |
snpChip |
an integer. Indicates which SNP chip's genotypes to retrieve. |
chr |
a vector of chromosomes to retrieve. If NULL, all chromosome are retrieved. |
simParam |
an object of |
Returns a matrix of SNP genotypes.
#Create founder haplotypes founderPop = quickHaplo(nInd=10, nChr=1, segSites=10) #Set simulation parameters SP = SimParam$new(founderPop) SP$addTraitA(10) SP$addSnpChip(5) #Create population pop = newPop(founderPop, simParam=SP) pullSnpGeno(pop, simParam=SP)