getSnpMap {AlphaSimR} | R Documentation |
Retrieves the genetic map for a given SNP chip.
getSnpMap(snpChip = 1, gender = "A", simParam = NULL)
snpChip |
an integer. Indicates which SNP chip's map to retrieve. |
gender |
determines which gender specific map is returned. Options are "A" for average map, "F" for female map, and "M" for male map. All options are equivalent if not using gender specific maps. |
simParam |
an object of |
Returns a data.frame for the SNP map.
#Create founder haplotypes founderPop = quickHaplo(nInd=10, nChr=1, segSites=10) #Set simulation parameters SP = SimParam$new(founderPop) SP$addSnpChip(5) #Pull SNP map getSnpMap(snpChip=1, simParam=SP)