makeSubCoreList {crso} | R Documentation |
Get list of core rules from random subsets of samples
makeSubCoreList(D, Q, rm, til, num.subsets, num.evaluated, shouldPrint)
D |
input matrix D |
Q |
input matrix Q |
rm |
binary rule matrix |
til |
list of top rule set index matrices |
num.subsets |
number of subset iterations, default is 100 |
num.evaluated |
number of top rs considered per k per iteration, default is 1000 |
shouldPrint |
Print progress updates? Default is TRUE |
library(crso) data(skcm) list2env(skcm.list,envir=globalenv()) Q <- log10(P) rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71 til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3, pool.sizes=c(60,20,20),max.stored=100,shouldPrint = FALSE) subcore.list <- makeSubCoreList(D,Q,rm.full,til.p2,num.subsets=3,num.evaluated=50)