getCoreRS {crso} | R Documentation |
Get core rules from phase 3 tpl and til
getCoreRS(D, rm, tpl, til, cov.thresh, perf.thresh)
D |
input matrix D |
rm |
binary rule matrix |
tpl |
list of top performances |
til |
list of top rule set index matrices |
cov.thresh |
core coverage threshold, defaults is 95 |
perf.thresh |
core performance threshold, default is 90 |
library(crso) data(skcm) list2env(skcm.list,envir=globalenv()) Q <- log10(P) rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71 til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20), max.stored=100,shouldPrint = FALSE) tpl.p2 <- evaluateListOfIMs(D,Q,rm.full,til.p2) core.rs <- getCoreRS(D,rm.full,tpl.p2,til.p2) # core.rs should be r1, r2, r3