evaluateListOfIMs {crso} | R Documentation |
Evaluate list of rule set matrices
evaluateListOfIMs(D, Q, rm, im.list)
D |
binary matrix of events by samples |
Q |
penalty matrix of events by samples |
rm |
matrix of rules ordered by phase one |
im.list |
list of rule set matrices |
list of Js for each rule set matrix
library(crso) data(skcm) list2env(skcm.list,envir=globalenv()) Q <- log10(P) rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71 p2.im.list <- makePhaseTwoImList(D,Q,rm.full,k.max = 3,pool.sizes=c(60,20,20),max.stored=100, shouldPrint = TRUE) p2.performance.list <- evaluateListOfIMs(D,Q,rm.full,p2.im.list)