makePhaseTwoImList {crso} | R Documentation |
Output list of top rule sets for each k in 1:k.max
makePhaseTwoImList(D, Q, rm.ordered, k.max, pool.sizes, max.stored, shouldPrint)
D |
binary matrix of events by samples |
Q |
penalty matrix of events by samples |
rm.ordered |
matrix of rules ordered by phase one |
k.max |
max k |
pool.sizes |
vector of the number of top rules evaluated for each k |
max.stored |
max number of rule sets saved |
shouldPrint |
Print progress updates? Default is TRUE |
largest n such that n choose k < max.num.rs
library(crso) data(skcm) list2env(skcm.list,envir=globalenv()) Q <- log10(P) rm.full <- buildRuleLibrary(D,rule.thresh = 0.05) # Rule library matrix, dimension: 60 x 71 til.p2 <- makePhaseTwoImList(D,Q,rm.full,k.max = 3, pool.sizes=c(60,20,20),max.stored=100,shouldPrint = TRUE)