editGenome {AlphaSimR} | R Documentation |
Edits selected loci of selected individuals to a homozygous state for either the 1 or 0 allele. The gv slot is recalculated to reflect the any changes due to editing, but other slots remain the same.
editGenome(pop, ind, chr, segSites, allele, simParam = NULL)
pop |
an object of |
ind |
a vector of individuals to edit |
chr |
a vector of chromosomes to edit. Length must match length of segSites. |
segSites |
a vector of segregating sites to edit. Length must match length of chr. |
allele |
either 0 or 1 for desired allele |
simParam |
an object of |
Returns an object of Pop-class
#Create founder haplotypes founderPop = quickHaplo(nInd=2, nChr=1, segSites=10) #Set simulation parameters SP = SimParam$new(founderPop) SP$addTraitA(10) #Create population pop = newPop(founderPop, simParam=SP) #Change individual 1 to homozygous for the 1 allele #at locus 1, chromosome 1 pop2 = editGenome(pop, ind=1, chr=1, segSites=1, allele=1, simParam=SP)