genParam {AlphaSimR} | R Documentation |
Calculates genetic and genic additive and dominance variances
for an object of Pop-class
genParam(pop, simParam = NULL)
pop |
an object of |
simParam |
an object of |
an nTrait by nTrait matrix of additive genetic variances
an nTrait by nTrait matrix of dominance genetic variances
an nTrait by nTrait matrix of additive-by-additive genetic variances
an nTrait by nTrait matrix of total genetic variances
an nTrait vector of additive genic variances
an nTrait vector of dominance genic variances
an nTrait vector of additive-by-additive genic variances
an nTrait vector of total genic variances
an nTrait vector of additive genic variances assuming random mating
an nTrait vector of dominance genic variances assuming random mating
an nTrait vector of additive-by-additive genic variances assuming random mating
an nTrait vector of total genic variances assuming random mating
an nTrait vector of trait means
an nTrait vector of expected trait means under Hardy-Weinberg equilibrium
a matrix of genetic values with dimensions nInd by nTraits
a matrix of breeding values with dimensions nInd by nTraits
a matrix of dominance deviations with dimensions nInd by nTraits
a matrix of additive-by-additive deviations with dimensions nInd by nTraits
an nTrait vector of trait means for genotype with all zeros
a matrix of additive genetic values with dimensions nInd by nTraits
a matrix of dominance genetic values with dimensions nInd by nTraits
a matrix of additive-by-additive genetic values with dimensions nInd by nTraits
#Create founder haplotypes founderPop = quickHaplo(nInd=10, nChr=1, segSites=10) #Set simulation parameters SP = SimParam$new(founderPop) SP$addTraitAD(10, meanDD=0.5) SP$setVarE(h2=0.5) #Create population pop = newPop(founderPop, simParam=SP) ans = genParam(pop, simParam=SP)