setTxnyms {treeman} | R Documentation |
Return a tree with txnyms added to specified nodes
setTxnyms(tree, txnyms)
tree |
|
txnyms |
named vector or list |
Returns a tree. Specify the taxonomic groups for nodes in a tree
by providing a vector or list named by node IDs. Takes output from searchTxnyms
.
Only letters, numbers and underscores allowed. To remove special characters use regular
expressions, e.g. gsub(['a-zA-Z0-9_'], '', txnym)
taxaResolve
, searchTxnyms
,
getNdsLng
, getNdLng
,
https://github.com/DomBennett/treeman/wiki/set-methods
library(treeman) data(mammals) # let's change the txnym for humans # what's its summary before we change anything? summary(mammals[['Homo_sapiens']]) # now let's add Hominini new_txnym <- list('Homo_sapiens'=c('Hominini', 'Homo')) mammals <- setTxnyms(mammals, new_txnym) summary(mammals[['Homo_sapiens']])