rmTips {treeman} | R Documentation |
Returns a tree with a tip ID(s) removed
rmTips(tree, tids, drp_intrnl = TRUE, progress = "none")
tree |
|
tids |
tip IDs |
drp_intrnl |
Boolean, drop internal branches, default FALSE |
progress |
name of the progress bar to use, see |
Removes tips in a tree. Set drp_intrnl to FALSE to convert internal nodes into new tips. Warning: do not use this function to remove internal nodes, this create a corrupted tree.
addTip
, rmNodes
,
https://github.com/DomBennett/treeman/wiki/manip-methods
library(treeman) tree <- randTree(10) tree <- rmTips(tree, 't1') summary(tree) # running the function using an internal # node will create a corrupted tree tree <- rmTips(tree, 'n3') # run summary() to make sure a change has # not created a corruption #summary(tree)