Plasmids {SDDE} | R Documentation |
These networks include 152 archaea, 217 eubacteria with the addition of 3 479 plasmids to illustrate the application of the SDDE package
data(Plasmids)
A data frame with the following 2 variables:
An original igraph network
An augmented igraph network
## Not run: data(Plasmids) info_network(g1,g2) ## End(Not run) ## Network characteristics: ## Total of new nodes in network Y: 3522 ## Number of edges in network Y: 187848 ## Number of nodes in network Y: 3848 ## Number of nodes in network X: 326 ## Total of pathways to investigate: 52975 ## Clustering coefficient network Y: 0.5591526 ## Clustering coefficient network X: 0.8643119 ## Average degree + std in network Y: 97.6341 + 119.6407 ## Average degree + std in network X: 10.45399 + 8.502816 ## Average path length in network Y: 2.903052 ## Average path length in network X: 4.915441 ## Number of clusters in network Y: 74 ## Number of clusters in network X: 22 ## Average cluster size + std in network Y: 52 + 417.644 ## Average cluster size + std in network X: 14.81818 + 25.1711 ## Nodes distribution in network Y (first row taxa, second row count): ## archaea eubacteria plasmid ## 152 217 3479