simple_freqs {polyfreqs} | R Documentation |
simple_freqs
estimates allele frequencies based on read count ratios.
simple_freqs(tM, rM)
tM |
Total reads matrix: matrix containing the total number of reads mapping to each locus for each individual. |
rM |
Reference reads marix: matrix containing the number of reference reads mapping to each locus for each individual. |
A vector of allele frequencies, one for each locus. Named allele_freqs_hat
.
Paul Blischak